PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37432.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 42029 Da PI: 7.2876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 86 | 108 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + L++H +H MLOC_37432.2 86 CSydNCGKTFVDVAALRKHAHVH 108 88889**************9887 PP | |||||||
2 | zf-C2H2 | 20.4 | 1.3e-06 | 113 | 137 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH tH MLOC_37432.2 113 YVCQepGCGKKFVDSSKLKRHHLTH 137 99********************999 PP | |||||||
3 | zf-C2H2 | 19.5 | 2.6e-06 | 143 | 167 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL+ H++tH MLOC_37432.2 143 FVCPhpGCGKAFSLDFNLRAHLKTH 167 89**********************9 PP | |||||||
4 | zf-C2H2 | 12.5 | 0.00045 | 173 | 197 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F++ Lk Hi+tH MLOC_37432.2 173 HICPfpACGKRFTSDFKLKCHIKTH 197 5799999*****************9 PP | |||||||
5 | zf-C2H2 | 13.4 | 0.00023 | 243 | 268 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + + + L+ H +t H MLOC_37432.2 243 YVCPyeGCGKAYIHGYKLNLHFKTqH 268 99********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-12 | 80 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 84 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 84 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.96E-8 | 87 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-13 | 111 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.7E-4 | 113 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.129 | 113 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.39E-12 | 124 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-18 | 136 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.884 | 143 | 172 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0011 | 143 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-7 | 171 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.91 | 173 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.073 | 173 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 175 | 197 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.08E-7 | 176 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-9 | 236 | 266 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.08E-7 | 238 | 266 | No hit | No description |
PROSITE profile | PS50157 | 9.224 | 243 | 273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 243 | 268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 245 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MQILAYLILN HGADFTLSSV YSWLLPPARL SRLCDFLHRL IIGGWLPRNP CAEDVYRNLK 60 ESGGGVQELE AQPRKVEPAT EILFLCSYDN CGKTFVDVAA LRKHAHVHGE RQYVCQEPGC 120 GKKFVDSSKL KRHHLTHTGQ KDFVCPHPGC GKAFSLDFNL RAHLKTHAVE NYHICPFPAC 180 GKRFTSDFKL KCHIKTHEKT GSPIAVQHTP PAEKPQNTIK PSIQATPKPS APTPPSFSSE 240 RPYVCPYEGC GKAYIHGYKL NLHFKTQHPE HNQEGNGRIA TPAAEYNYAD AGDIAPNPKR 300 SKTNQAHRAP PSNAYNVKVS SRMGVDTSGV KNQWPGKGMY DDDSEETEED PGGNNVQDGW 360 RYGNQNADDE ETEEDED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 1e-34 | 76 | 199 | 1 | 119 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37432.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359191 | 0.0 | AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180408.1 | 0.0 | uncharacterized zinc finger protein At4g06634-like | ||||
TrEMBL | F2D5N1 | 0.0 | F2D5N1_HORVV; Predicted protein | ||||
STRING | MLOC_37432.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 6e-84 | C2H2 family protein |