PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_37425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29578.3 Da PI: 8.0766 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 6e-09 | 181 | 227 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT eE +lvda+ +G g+W+ ++ Rt+k++ ++w+++ MLOC_37425.1 181 HWTSEEVNKLVDAISAHGAGQWAELKKERFpeSVRTAKHLTDKWRNL 227 6***********************9987556*77***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.654 | 174 | 232 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 175 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.48E-11 | 176 | 230 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-5 | 178 | 230 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-6 | 181 | 227 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.37E-14 | 182 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEVYSTSLDY DNTDFQALLE GPQDEHDLDR LLKCAFNPTY IKELEFYSPT SDHGMTIQTF 60 APATPEALLE KEEAHATMAL IGEGGEYGEG GEREVMKEGG GSMYTQPCHR RSRRLAPTTT 120 SPKEGPCDLP DYMPKSGWTH KSRVRSARKR GTWSINTKPC SRDVCSVCEG QKHGRRRNND 180 HWTSEEVNKL VDAISAHGAG QWAELKKERF PESVRTAKHL TDKWRNLVKA FTGNVKRRIS 240 PHLDKDCIEK IQRLAAVYPL K |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_37425.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193059.1 | 1e-94 | uncharacterized protein LOC109778885 | ||||
TrEMBL | A0A287XVM1 | 0.0 | A0A287XVM1_HORVV; Uncharacterized protein | ||||
TrEMBL | M0VUQ4 | 0.0 | M0VUQ4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_37425.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19509 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-12 | TRF-like 6 |