PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37423.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 938aa    MW: 102003 Da    PI: 5.8682
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37423.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK88.45.9e-28562613152
        RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++
  MLOC_37423.1 562 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 613
                   589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557813.02E-5207283IPR029016GAF domain-like
PROSITE profilePS5151916.711547633IPR003035RWP-RK domain
PfamPF020422.6E-25565613IPR003035RWP-RK domain
SuperFamilySSF542773.92E-24830919No hitNo description
Gene3DG3DSA:3.10.20.2407.0E-23833915No hitNo description
SMARTSM006663.3E-18836918IPR000270PB1 domain
PROSITE profilePS5174522.381836918IPR000270PB1 domain
PfamPF005646.8E-16837917IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MDVPLPSQSS RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSIADQL FSLLNDSSAQ  60
QMFAMWSSLG SSPRASGVSE DMQLDAYSSG PGDQKVDLVS SVNPAEAGTG RVAKSSGDLD  120
SDSDPQQGST SLVPRPIAGN VLADRMLMAL SLFRKSLGGG VLAQVWMPVE QEGHVVLSTC  180
EQPFLLDHAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MEYALHHEVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF DAEMDNLRHA LQAVNLETAK  300
DCIDQKVYSA NQKAAFTEIL DVLRAICHAH MLPLALTWVP SSNGNDGGHV GHDSVLDSQS  360
GKAILHIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR ALKSNLPFFS PNIREYGIKD  420
YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC TGSEEQQMLL NNLSSTMQRI  480
CKSLRTVSEA EVEKVDVCTA VMYKATSGSC LPTGQSESSS RGDQPATEEA FQDLSLIDKQ  540
GDMSEQAQSS TMRHAEKKRS TAEKNIGMDV LRKYFSGSLK DAAKSLGVCP TTLKRICRTH  600
GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT GSLVPAVSLP EKTALLSCDA  660
VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER ESCQLQRPDA QKGEGDEFHI QTSNYSGSGD  720
HTSYGVNVTH HINSQGTQGP LYPTGDVSAL YDKETGCIEP SGHVLPSIKT TRDQIVGRNS  780
PPAQQADIDM FDDRDAREHT HPSTSGMTDS SSGSASSHPT FKKNPARPLK DNSSPALTVK  840
ATYNGDTVRF KFLPSMGWYN LLEEIAKRFK LSTGVFQLKY KDDEDEWVIM ANDSDLQECV  900
DVMDSMGTRN VKLQVRDLPC FISSSGSSTC LQLEGHNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150529.10.0protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLM0VUQ30.0M0VUQ3_HORVV; Uncharacterized protein
STRINGMLOC_37423.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]