PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37364.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 104aa MW: 12037.5 Da PI: 6.5085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.8 | 3.9e-18 | 44 | 92 | 2 | 51 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 +pGfrFhPt+eel+ +yL++kv+gk++++ + i++vd+y+++PwdLp ++ MLOC_37364.2 44 MPGFRFHPTEEELIEFYLRRKVDGKRFNI-DLIASVDLYRYDPWDLPGTA 92 79***************************.99**************9433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-18 | 42 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.849 | 43 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-8 | 45 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MTRSRPTTTM GGSVPDHHHQ QQQHDGEVDG GQLQHGGEHV ETVMPGFRFH PTEEELIEFY 60 LRRKVDGKRF NIDLIASVDL YRYDPWDLPG TAQRRFHLII IMAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-16 | 30 | 92 | 2 | 64 | Stress-induced transcription factor NAC1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37364.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY672069 | 1e-146 | AY672069.1 Hordeum vulgare subsp. vulgare NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156931.1 | 8e-57 | NAC domain-containing protein 35-like | ||||
TrEMBL | M0VUG2 | 2e-71 | M0VUG2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_37364.1 | 2e-52 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 3e-26 | NAC domain containing protein 35 |