PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_37104.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 330aa MW: 36942.5 Da PI: 6.8028

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_37104.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.8e-52	19	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+y+++Pw Lp ++ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v ++g MLOC_37104.2 19 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWALPDRALFGTREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGG 114 79**************************.88***********77778999************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kk Lvfy g+apkg+ktdW+mheyrl MLOC_37104.2 115 RTMGIKKALVFYAGKAPKGVKTDWIMHEYRL 145 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-64	15	172	IPR003441	NAC domain
PROSITE profile	PS51005	60.215	19	172	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	20	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGMPAARRRE RDAEAELNLP PGFRFHPTDD ELVEHYLCRK AAGQRLPVPI IAEVDLYRFD 60 PWALPDRALF GTREWYFFTP RDRKYPNGSR PNRAAGNGYW KATGADKPVA PRGGRTMGIK 120 KALVFYAGKA PKGVKTDWIM HEYRLADAGR AAASKKGSLR LDDWVLCRLY NKKNEWEKMQ 180 LQQQQGEGET MMEPKAEENT ASDMVVTSHS HSQSQSHSHS WGEARTPESE IVDNDPSLFH 240 QAQATAFQTQ SPAAAAAHQE MMATLMVPKK EAADEGRNDL FVDLSYDDIQ SMYNGLDMMP 300 PGDDLLYSSF FASPRVRGSQ PGSGGMPAPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-108	1	178	1	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_37104.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249102	0.0	AK249102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf19c03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174665.1	0.0	NAC domain-containing protein 67-like
Swissprot	Q75HE5	1e-151	NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBL	F6MEL2	0.0	F6MEL2_HORVV; Stress-induced transcription factor SNAC1
STRING	MLOC_37104.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4414	30	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	3e-86	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Chen Q,Wang Q,Xiong L,Lou Z A structural view of the conserved domain of rice stress-responsive NAC1. Protein Cell, 2011. 2(1): p. 55-63 [PMID:21337010]