PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36861.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 455aa    MW: 49874.8 Da    PI: 7.8254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36861.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.5e-15365446179
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                   f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+
  MLOC_36861.1 365 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDT 446
                   99**************************555567778***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-25357446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16362446IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-19363446No hitNo description
SMARTSM010192.3E-10365455IPR003340B3 DNA binding domain
PfamPF023622.8E-12365446IPR003340B3 DNA binding domain
PROSITE profilePS508639.827365455IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAGMGAARCM NAACGAPAPT AAGVGEWRKG WPLRSGGFAL LCDKCGLAFE QLVFCDIFHQ  60
KESGWRDCSF CGKHLHCGCV ASKNSFDLLD SGGVQCMNCM KNPGVQSVTV SCQVAPKLFL  120
SPQNNQRLFG KSDELLPGRP LESPSLMLDS RNDDIAILTK SSHPFLVKNL ELGQSSNILR  180
QKETENGARQ IKWEQPTLSI CDMGRMPFLI RPQSALESPQ SQCTRRDDNR DPAADSTTSE  240
SVSEACLSMS LGIANNGNKM EATSTMERPM VSPTTPFSDG REPATALSPF QHAQRARHFL  300
TRPPRVADGA AFDPMKDGFP NLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST  360
IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR PLTIQDAKGK EWHFQFRFWP  420
NNNSRMYVLE GVTPCIQSLQ LQAGDTGDLQ LVSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-563434462105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36861.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158213.10.0B3 domain-containing protein Os07g0679700 isoform X1
RefseqXP_020158214.10.0B3 domain-containing protein Os07g0679700 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLF2D4700.0F2D470_HORVV; Predicted protein (Fragment)
STRINGMLOC_36861.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-99HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]