PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36351.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 246aa    MW: 27001.6 Da    PI: 7.598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36351.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1370122155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   r+ +hn+ Er RR+++N+ ++ Lr+llP  +   + kKls   ++ ++ +YI +Lq
  MLOC_36351.1  70 RKISHNAYERDRRKQLNELYSDLRSLLPDsD---HTKKLSIPITVSRVLKYIPELQ 122
                   6889*************************44...6666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1667137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1169125No hitNo description
PROSITE profilePS5088813.72569121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1270137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-975127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGHQTQMFDD PFASSMSSLD ADIFSVAGGL HPSQWPGLDH DVSLAPAANN GTSSGGYGSP  60
GGGDGSGSHR KISHNAYERD RRKQLNELYS DLRSLLPDSD HTKKLSIPIT VSRVLKYIPE  120
LQKQVDGLEK KKEELTRASC KPGVLTMKEN TVPIVSATCL DEREIMVQVS LVSTMAGALP  180
MSKCIKVLEN EGLRLISSST SAFQNRTFYS LHLQRTQRTM SKECPAFCEE LENALTQKAG  240
LRLHHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517460.0AK251746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf134m16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193397.11e-156transcription factor bHLH101-like
SwissprotA2WZ602e-96IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM0VQ620.0M0VQ62_HORVV; Uncharacterized protein
STRINGMLOC_36351.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-32bHLH family protein