PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_35104.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 776aa    MW: 84589.2 Da    PI: 5.6334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_35104.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1973127256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     R+++t+eq+ +Le++Fe  ++p++++r eL++++gL+ +qV++WFqNrR   k
  MLOC_35104.2  73 HFRRRHTAEQILILEAAFEGYQHPDEKRRLELSRRTGLSAAQVQIWFQNRRNTGK 127
                   5699***********************************************7655 PP
2START100.82.4e-322674946205
                   HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
         START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                   a++el  ++++++p+W++      e  n+ e+l +  ++        +  +a r +g+  +++++lv +l+d    W++t++    +a+t + i++g
  MLOC_35104.2 267 ALEELKVLVGLDAPLWSTPQggevEVINYREYLETMFPGMYeryemdFCADATRKTGIISCTATDLVGILMDAE-WWSQTFPgivaSATTSKIITPG 362
                   566666677888888888876666555666666666665557888777889***********************.**********9*********** PP

                   ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--.........-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
         START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe........sssvvRaellpSgiliepksnghskvtwvehv 170
                       g  qlm+ael +lsplvp R+  f+R++++l++ +w++vdvSvd   eq+  +         s    ++llpSg++i++++ng+++vtw+ ++
  MLOC_35104.2 363 dsghGLAQLMTAELRVLSPLVPvRKINFIRHCQRLEENTWAVVDVSVDgiLEQDGGQaaalddgaPSTHTACKLLPSGCRIQELENGYCQVTWIVNM 459
                   ***********************************************9443343332444455443456678************************* PP

                   E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
         START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++++ l ++l +sg a ga++w+a lqr ce
  MLOC_35104.2 460 VHDEATVPPLHHPLFRSGWALGASRWLASLQRRCE 494
                   ********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1956123IPR009057Homeodomain-like
SuperFamilySSF466892.05E-1860129IPR009057Homeodomain-like
PROSITE profilePS5007116.8669129IPR001356Homeobox domain
SMARTSM003892.5E-1871133IPR001356Homeobox domain
PfamPF000461.1E-1673127IPR001356Homeobox domain
CDDcd000861.16E-1481123No hitNo description
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PROSITE profilePS5084830.582253498IPR002913START domain
SMARTSM002342.6E-10262495IPR002913START domain
CDDcd088751.45E-73265494No hitNo description
SuperFamilySSF559611.96E-20267494No hitNo description
PfamPF018522.6E-26270494IPR002913START domain
SuperFamilySSF559618.65E-6517751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDGDWLEENS DLYNWLVLGF ASGDNQVIQH DLGAETDGLL GDATNVSNTH AAAADQENGG  60
GQTNGDQRAR TRHFRRRHTA EQILILEAAF EGYQHPDEKR RLELSRRTGL SAAQVQIWFQ  120
NRRNTGKNKA QKKETEEYQE ENGRLQAEQQ ALISAMQNKI CIPCRGEGTP EWHRLYAEHV  180
RLKDEQMRIA AFLNSVSGGR LQVINHTVVD TGNASAATDH DAVPPPSHHA PLTVTDPNPV  240
MFPDEGIAGD DDETAGRTLL LQHVVCALEE LKVLVGLDAP LWSTPQGGEV EVINYREYLE  300
TMFPGMYERY EMDFCADATR KTGIISCTAT DLVGILMDAE WWSQTFPGIV ASATTSKIIT  360
PGDSGHGLAQ LMTAELRVLS PLVPVRKINF IRHCQRLEEN TWAVVDVSVD GILEQDGGQA  420
AALDDGAPST HTACKLLPSG CRIQELENGY CQVTWIVNMV HDEATVPPLH HPLFRSGWAL  480
GASRWLASLQ RRCEYIAFLH SSSNPTRSLN NRVAITPEGR KSVLEAAHRM TLRFYEAICG  540
PAALPWRSVN ECRGRCGIGA ERFEVVVRVV TSPVGGDATV LRATTTVWLP GTPPQLVFDY  600
LCDGDRRTEW DIVANGAPIR REGYFHTGQL HGNAVSLLRT IASNGATNKL ILEESCVDAS  660
CMVLAYAPID EQSMKDVMDG THTPFSLLPS GVVVLPDGHA EPGPGGSPAS AMCSSSSSTG  720
HKRNSGSLVS TMYQTLLSGH PPERLSKAVA GNVGKLLCDA IDKIKSAVHA DVVLAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_35104.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194819.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A287S1X10.0A0A287S1X1_HORVV; Uncharacterized protein
STRINGMLOC_35104.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-118HD-ZIP family protein