PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34938.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 508aa    MW: 56894.1 Da    PI: 7.8768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34938.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12109149445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
     MLOC_34938.2 109 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIEHYT 149
                      *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.1E-15537505IPR016827Transcriptional adaptor 2
SMARTSM002912.6E-104590IPR000433Zinc finger, ZZ-type
PfamPF005695.4E-104789IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013511.2854992IPR000433Zinc finger, ZZ-type
SuperFamilySSF578508.0E-1549112No hitNo description
CDDcd023355.71E-264997No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.12E-12102155IPR009057Homeodomain-like
PROSITE profilePS5129322.742104156IPR017884SANT domain
SMARTSM007174.1E-11105154IPR001005SANT/Myb domain
PfamPF002495.7E-12108149IPR001005SANT/Myb domain
CDDcd001679.41E-12109150No hitNo description
Gene3DG3DSA:1.10.10.601.2E-8109151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGRSRGVPNS GDDDTNHRSK RRRVASTGDA SDSLSAACGG AGDGKKALYH CNYCNKDLSG  60
KIRFKCSKCP DFDLCVECFS VGAEVQPHRS NHPYRVMDNL SFPLICPDWN ADEEILLLEG  120
IEMYGLGNWA EVAEHVGTKS KAQCIEHYTT AYMNSPCYPL PDMSHVNGKN RKELLAMAKV  180
QGESKKGIPL LSGDLTPKAE SPFSPSRVKM EDALGEGPAS RSPSHIPGGA NKKASTAGHF  240
KDNSNLSKVE DGHMDRSIGV KKPRYSADEG PSLTELSGYN AKRHEFDPEY DNDAEQALAE  300
MEFKETDTET DRELKLRVLR IYLSRLDERK RRKEFILERN LLYPNPLEKD LTNEDKEVYH  360
RYKVFMRFLS KEEHEALVRS VIEERKIRRR IQELQECRSA GCRTLAEAKI HIEQKRRKEY  420
EANALKAKES GQLISNSKSG HKTNRPMKVE TDGSLDLKKG SAILDAGGRD SPKSTGPTSA  480
KQWDDWDIVG LPGAELLSVS VRILLIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E1e-36491645120Transcriptional adapter 2
6cw3_G1e-36491645120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2328333RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34938.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662460.0AK366246.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149065.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLM0VNY20.0M0VNY2_HORVV; Transcriptional adapter
STRINGMLOC_34938.10.0(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]