PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_34938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 568aa MW: 63826.2 Da PI: 7.6832 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.8 | 4.4e-12 | 109 | 149 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g +++ qc++++ MLOC_34938.1 109 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIEHYT 149 *****************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 7.0E-178 | 37 | 564 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 2.6E-10 | 45 | 90 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 6.3E-10 | 47 | 89 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 9.42E-15 | 49 | 112 | No hit | No description |
PROSITE profile | PS50135 | 11.285 | 49 | 92 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 1.35E-25 | 49 | 97 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 51 | 78 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.27E-12 | 102 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.742 | 104 | 156 | IPR017884 | SANT domain |
SMART | SM00717 | 4.1E-11 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 108 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 109 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-11 | 109 | 150 | No hit | No description |
SuperFamily | SSF46689 | 7.17E-21 | 467 | 557 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 9.718 | 477 | 568 | IPR007526 | SWIRM domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MGRSRGVPNS GDDDTNHRSK RRRVASTGDA SDSLSAACGG AGDGKKALYH CNYCNKDLSG 60 KIRFKCSKCP DFDLCVECFS VGAEVQPHRS NHPYRVMDNL SFPLICPDWN ADEEILLLEG 120 IEMYGLGNWA EVAEHVGTKS KAQCIEHYTT AYMNSPCYPL PDMSHVNGKN RKELLAMAKV 180 QGESKKGIPL LSGDLTPKAE SPFSPSRVKM EDALGEGPAS RSPSHIPGGA NKKASTAGHF 240 KDNSNLSKVE DGHMDRSIGV KKPRYSADEG PSLTELSGYN AKRHEFDPEY DNDAEQALAE 300 MEFKETDTET DRELKLRVLR IYLSRLDERK RRKEFILERN LLYPNPLEKD LTNEDKEVYH 360 RYKVFMRFLS KEEHEALVRS VIEERKIRRR IQELQECRSA GCRTLAEAKI HIEQKRRKEY 420 EANALKAKES GQLISNSKSG HKTNRPMKVE TDGSLDLKKG SAILDAGGRD SPKSTGPTSA 480 KQWDDWDIVG LPGAELLSVS EKLLCCQNRL LPSHYLRMQE VLMQEMFKGN IVKKEDAHVL 540 FKVDPAKVDT VYDMVTKKLG NNEEAPMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 2e-38 | 49 | 164 | 5 | 120 | Transcriptional adapter 2 |
6cw3_E | 3e-38 | 49 | 164 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 3e-38 | 49 | 164 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
2 | 328 | 333 | RKRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_34938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366246 | 0.0 | AK366246.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149065.1 | 0.0 | transcriptional adapter ADA2 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | M0VNY2 | 0.0 | M0VNY2_HORVV; Transcriptional adapter | ||||
STRING | MLOC_34938.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7708 | 38 | 47 |
Publications ? help Back to Top | |||
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