PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34636.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 299aa    MW: 32736.5 Da    PI: 4.7933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34636.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT  E+  l  +++++G g+W+ I            R+  ++k++w++
     MLOC_34636.1  5 KQKWTSREEAALRAGIAKHGVGSWRVILTDQEfssilSCRSNVDLKDKWRN 55
                     79**************************99888899988999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.46161IPR017930Myb domain
SuperFamilySSF466899.79E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-11356IPR009057Homeodomain-like
SMARTSM007174.7E-4459IPR001005SANT/Myb domain
PfamPF002491.8E-5556IPR001005SANT/Myb domain
CDDcd116602.15E-17657No hitNo description
SuperFamilySSF467853.05E-11119191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.6E-6120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-12121191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.556122190IPR005818Linker histone H1/H5, domain H15
PfamPF005384.0E-7127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGARKQKWTS REEAALRAGI AKHGVGSWRV ILTDQEFSSI LSCRSNVDLK DKWRNMNVFS  60
TESGSMNKGR TATKKNRATP KRNDHSMAIS TVASDVDDEI VDEQPIASVS SEVWNVLIPK  120
KSRSRLNNII LESVKNLNEP TGSHRTTIAN YIEEEYLPPG DFDHILSANL KDLTTSGELI  180
EVNRNYRIAP APGSMYSEGR SPETLLLEDI QGEPQMTESD DIETLTKSRV DAELAHMITM  240
TAKEAASAAA RAVAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRSR NVTELMAQS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519300.0JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152791.11e-159single myb histone 5-like
SwissprotC0HIA31e-109SMH6_MAIZE; Single myb histone 6
TrEMBLM0VN370.0M0VN37_HORVV; Uncharacterized protein
STRINGMLOC_34636.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-56telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]