PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_34311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 112aa MW: 11970.7 Da PI: 8.1077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp C ++F + + H+r+H MLOC_34311.1 70 YGCPVCFRMFATVKAVHGHMRSH 92 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.26E-6 | 68 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 68 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.494 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MMTGSSSQVF IMPGAGQVHY LLAGGAGGGE DPRYPCTFKS LHEQDAVVPA IARGSKRPAA 60 VPGGAHVEPY GCPVCFRMFA TVKAVHGHMR SHTDRSWRGM EPPRPEPLGE LE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_34311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175215.1 | 4e-51 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3B6SQ48 | 9e-65 | A0A3B6SQ48_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446YZG5 | 1e-64 | A0A446YZG5_TRITD; Uncharacterized protein | ||||
STRING | MLOC_34311.1 | 3e-77 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |