PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34252.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 279aa    MW: 29506.8 Da    PI: 5.0536
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34252.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box247.9e-082065342
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   + C+ +e+ ++   C+ +   lC++C   +H+       H++ p+
  MLOC_34252.1 20 VWLCEVCEHAPAAVTCRADAAALCATCDADIHSAnplasrHERLPI 65
                  679*****************************66889999998776 PP
2CCT69.39.9e-24204247144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  MLOC_34252.1 204 REARLMRYREKRKNRRFQKTIRYASRKAYAETRPRIKGRFAKRT 247
                   9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4381865IPR000315B-box-type zinc finger
SMARTSM003362.5E-151865IPR000315B-box-type zinc finger
PfamPF006434.2E-62065IPR000315B-box-type zinc finger
CDDcd000218.17E-92165No hitNo description
PROSITE profilePS5101716.777204246IPR010402CCT domain
PfamPF062036.4E-18204246IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
PLCAGCDARA HGAGSRHARV WLCEVCEHAP AAVTCRADAA ALCATCDADI HSANPLASRH  60
ERLPITPFFG ALADPPQPVP SPSSAAATQE DAEDDGSNEA EAASWLLPEP GDSPEDSAAT  120
FFADSDAYLD LDFVRSMDGI KAIGVPVAPS ELDLAGGTLF YPEHSMNHSM STSEVAVVPD  180
ALSAGGAPAP APSVAVVASK GKEREARLMR YREKRKNRRF QKTIRYASRK AYAETRPRIK  240
GRFAKRTAED DALEQDGPFS PASSAHLASD GDYGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3688090.0AK368809.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194140.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ940T92e-62COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLF2DY410.0F2DY41_HORVV; Predicted protein
STRINGMLOC_34252.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-34CONSTANS-like 3