PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_33258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 120aa MW: 14110.3 Da PI: 10.1132 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41 | 6.3e-13 | 4 | 61 | 32 | 91 |
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + Cs+eg+++ k e+++r ++++r++Cka +k+kk+ ++w +k+ leHnH+l+p MLOC_33258.1 4 LYACSREGNSTFYKPG-EERKRAKMSKRVNCKAAVKMKKK-GKEWIYEKVLLEHNHTLNP 61 699*******999888.99999*****************9.9***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.5E-10 | 4 | 61 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MPRLYACSRE GNSTFYKPGE ERKRAKMSKR VNCKAAVKMK KKGKEWIYEK VLLEHNHTLN 60 PDACELKHIR SHKNKDPVIM ELIDDLETCD VSPNATMNVL TRFHGNRDHM SRSERDLQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_33258.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164017.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020164018.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020164019.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A452ZUL0 | 2e-68 | A0A452ZUL0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_8BAA498F1.1 | 1e-47 | (Triticum aestivum) |