PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_33149.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 43aa    MW: 4968.6 Da    PI: 4.8996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_33149.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-051336122
                  EEET..TTTEEESSHHHHHHHHHH CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt 22
                  y+C+   C +sF +k +L  H r 
  MLOC_33149.1 13 YTCGieGCLMSFDTKRELSLHERD 36
                  99*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-4335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 43 aa     Download sequence    Send to blast
RTPRDHPTRV EGYTCGIEGC LMSFDTKREL SLHERDLCVL DDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_33149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.12e-17lysine-specific demethylase JMJ705-like
TrEMBLA0A287J4373e-22A0A287J437_HORVV; Uncharacterized protein
STRINGMLOC_33149.17e-24(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-07relative of early flowering 6