PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_31894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 27725.2 Da PI: 6.3099 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 3.9e-30 | 100 | 157 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkk+ve+sa +++++i+Y+g+Hnh+ MLOC_31894.1 100 VDDGYNWRKYGQKAVKGGEYPRSYYKCTQASCPVKKRVEHSA-YGQITQIIYRGQHNHQ 157 59****************************************.9**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-27 | 92 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.928 | 95 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 98 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-30 | 100 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-23 | 101 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLIHLFLQGN FEMSHQQALA QVTAQAFHSQ YTVDSQADYS LPFSSEATSA LTSQFINSSA 60 NVTSMKETAT PPLRTVHDYL KTYEVSQGFQ TSALTVDKPV DDGYNWRKYG QKAVKGGEYP 120 RSYYKCTQAS CPVKKRVEHS AYGQITQIIY RGQHNHQRPP KRRSKDGGNL LNEDDFPENR 180 DALTRSERGS QDHSGKVEVS NDGIAGPSMS KRRDGGDQSS GSSDREEEDN DEAGDDNGDA 240 GIVNANKRCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 100 | 160 | 14 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 162 | RPPKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_31894.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250089 | 0.0 | AK250089.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf63p16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193919.1 | 1e-157 | probable WRKY transcription factor 4 | ||||
Refseq | XP_020193920.1 | 1e-157 | probable WRKY transcription factor 4 | ||||
TrEMBL | A0A287NYD6 | 0.0 | A0A287NYD6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287NYI2 | 0.0 | A0A287NYI2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_31894.2 | 1e-174 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.2 | 5e-44 | WRKY DNA-binding protein 4 |