PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31534.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-X1
Protein Properties Length: 368aa    MW: 39722 Da    PI: 8.1544
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31534.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.64.2e-063956118
      zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                  CG H+C+ +CHeG+CppC
  MLOC_31534.1 39 CGVHRCKGTCHEGECPPC 56
                  ****************** PP
2zf-NF-X118.25.3e-06244260117
      zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                   CG H C ++CH+ pC+p
  MLOC_31534.1 244 CGLHACARPCHPSPCDP 260
                   ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060089.46E-102977No hitNo description
PfamPF014223.5E-53956IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00133958IPR000967Zinc finger, NF-X1-type
PfamPF014220.015134152IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043134153IPR000967Zinc finger, NF-X1-type
PfamPF0142239191207IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49191209IPR000967Zinc finger, NF-X1-type
PfamPF014222.0E-4244260IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027244279IPR000967Zinc finger, NF-X1-type
PfamPF014223.6281307IPR000967Zinc finger, NF-X1-type
SMARTSM004388.6288309IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPGKVTTCHC GKTMLEEKRA SCLDPIATCD KVCEKRLPCG VHRCKGTCHE GECPPCLVRV  60
EQRCRCGSSG QMVECYKVSK EEFRCNKPCG RKKNCGRHRC SECCCPLSKP FAQHQGDSMD  120
PHFCQIPCGK KLRCGQHGCQ HLCHSGHCDP CREIIFSELT CACGRSSIPP PQPCGTPTPS  180
CPHQCIVPQP CGHPASHQCH FGDCPPCVVP VTRECVGGHV MLRNIPCGSK DIRCNQPCGK  240
NRQCGLHACA RPCHPSPCDP LPANGEASSS SGGKVSCGQL CGVPRRECKH TCNTPCHPSS  300
PCPDVRCEHR ATITCSCGRI STTVPCSAGG AYNGDSMFDI SVMQQLPMPL QPVESNGKRV  360
PLGQRKLC
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_31534.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605820.0AK360582.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121G13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179129.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY591e-152NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A287XW590.0A0A287XW59_HORVV; Uncharacterized protein
TrEMBLA0A287XWF50.0A0A287XWF5_HORVV; Uncharacterized protein
STRINGMLOC_31534.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-144NF-X-like 1