PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_29687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 100aa MW: 11515.1 Da PI: 7.144 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.7 | 9.2e-14 | 24 | 70 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++kkt+k+r++ + +tgCkak++vk+ dg+wev++++ eHnH+l+ MLOC_29687.1 24 SKTKKTTKKRKRDTILQTGCKAKMVVKLI-DGRWEVIHFVGEHNHPLV 70 34455789999999***************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-11 | 24 | 70 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
LDEIVDETKD DDQDEDIVFL DDDSKTKKTT KKRKRDTILQ TGCKAKMVVK LIDGRWEVIH 60 FVGEHNHPLV DKPSLTKYCD HTKGSQQKKG HSLHIFITAI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_29687.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188487.1 | 7e-21 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A287XGM8 | 7e-65 | A0A287XGM8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_29687.1 | 4e-66 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |