PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_2933.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 644aa    MW: 72136.8 Da    PI: 6.5594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_2933.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.31.4e-1102726422374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA+a + +d++   +lL++++ ++sp+gd+ qRla+y++++L+arla+++s++y++l++++ts   s++ l+++kl+  ++P+l++  +  N
  MLOC_2933.1 272 TTLLIHCAQAAAIDDHRGSGELLKQIRRHSSPHGDAGQRLAHYIANGLEARLAGTGSTVYRSLAARRTS---SADMLKIFKLYGTACPFLRMFRFYSN 366
                  689***************************************************************999...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  +aIl+a++g + vHi+D++i  G+QWp +lq +++R++gpp++RiTg++ p++g   +e+le+tg+r++++A+ ++vpfe+++ +a +++++++e+Lr
  MLOC_2933.1 367 EAILDAAKGVTSVHILDYGIDWGFQWPIFLQRISKRDGGPPRIRITGIDLPQPGfrPAERLEATGRRISEYAKMFHVPFEYRA-IAAKWDAIRVEDLR 463
                  *****************************************************9*****************************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  +++++ l+Vn+ +++ +++de+v+ es+r +vL+++++++P++++++  +   n++ F++rf eal y+s+ fd+lea++p+ +e+r+ +Ere++gre
  MLOC_2933.1 464 IDKDDLLIVNCLFRMRHMMDETVTEESPRMTVLNTIRRMNPHLFIHAVVNGTFNAPFFVTRFKEALFYFSSHFDMLEATAPPVDEHRQLIEREYFGRE 561
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + nvvaceg+er+er et+++W+ r  +aGF++vpl ++++k+a++ + k + + + v+e+++++++gWk+r + ++S W+
  MLOC_2933.1 562 ALNVVACEGTERVERPETYKQWQVRNLRAGFRQVPLLQETVKKARYKVTKSYHKDFFVDEDNKWMLQGWKGRVICALSTWK 642
                  ****************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.946245622IPR005202Transcription factor GRAS
PfamPF035144.8E-108272642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MGSCEDVEYG DVFSVPNPAA APAYGLNFSF QQQQLLFPPS AYGFHALPAA DYQPSPPQSA  60
PIGGTPSPVS TTTELGSPEE ASDDAVLAYI NQFLLEDDDD ESSAPAAAAP ARDSALLAVA  120
KPFVDIIADA KPAYQHTSWT NPCRAFAGTG GGSQDMFVSS RQSSCQLVPC DSVKVEEECA  180
VHKGRKNRHG DDDLELEDEQ RRKQLALCEE ETIREMFDKV LLCNGVNCIL QSPLPAEAEI  240
STVYVKGSGN RRGRKKGKTG VPTVEEESVD LTTLLIHCAQ AAAIDDHRGS GELLKQIRRH  300
SSPHGDAGQR LAHYIANGLE ARLAGTGSTV YRSLAARRTS SADMLKIFKL YGTACPFLRM  360
FRFYSNEAIL DAAKGVTSVH ILDYGIDWGF QWPIFLQRIS KRDGGPPRIR ITGIDLPQPG  420
FRPAERLEAT GRRISEYAKM FHVPFEYRAI AAKWDAIRVE DLRIDKDDLL IVNCLFRMRH  480
MMDETVTEES PRMTVLNTIR RMNPHLFIHA VVNGTFNAPF FVTRFKEALF YFSSHFDMLE  540
ATAPPVDEHR QLIEREYFGR EALNVVACEG TERVERPETY KQWQVRNLRA GFRQVPLLQE  600
TVKKARYKVT KSYHKDFFVD EDNKWMLQGW KGRVICALST WKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4726564312379Protein SCARECROW
5b3h_D5e-4726564312379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_2933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507920.0AK250792.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf94i06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179545.10.0scarecrow-like protein 9
TrEMBLM0VI100.0M0VI10_HORVV; Uncharacterized protein
STRINGMLOC_2933.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-162GRAS family protein