PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28975.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 148aa    MW: 16311 Da    PI: 9.9233
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28975.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.6e-1824111186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +Wt+  +  L++a++++ e l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s s s +p+++q+e
  MLOC_28975.5  24 EWTDGAISSLLDAYTDRFELLNRGNLRGRDWEDVAAAVtdghGKGSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 111
                   5*************************************88854555589*****************88888877..467779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2122113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
PRPSASSKGR GGGVSSDYRK DREEWTDGAI SSLLDAYTDR FELLNRGNLR GRDWEDVAAA  60
VTDGHGKGSG GKSVEQCKNK IDNLKKRYKV ECQRIAGSAS ASLWPWYKQM EQIMGNSPSP  120
GTLKPPPATN DEKPRQQQQN SNKRCPSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28975.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.12e-84uncharacterized protein LOC109744472
TrEMBLA0A287IER35e-99A0A287IER3_HORVV; Uncharacterized protein
STRINGMLOC_28975.22e-80(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-42Trihelix family protein