PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28975.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 273aa    MW: 29643 Da    PI: 9.881
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28975.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-1772159186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +Wt+  +  L++a++++ e l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s s s +p+++q+e
  MLOC_28975.2  72 EWTDGAISSLLDAYTDRFELLNRGNLRGRDWEDVAAAVtdghGKGSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 159
                   5*************************************88854555589*****************88888877..467779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2070161No hitNo description
Gene3DG3DSA:3.40.1160.105.1E-14188272IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.82E-10200271IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
GSAAGPFAPA REEGNHSSDR GKASHHTKRR RDRPEEFSDG GEYCSYISGG GSGGRRGRGG  60
GVSSDYRKDR EEWTDGAISS LLDAYTDRFE LLNRGNLRGR DWEDVAAAVT DGHGKGSGGK  120
SVEQCKNKID NLKKRYKVEC QRIAGSASAS LWPWYKQMEQ IMGNSPSPGT LKPPPATNDE  180
KPRQQQQNSN KRSTPLSNPK WKRVLLKIGG TALAGEAPHN VDPKVIMLIA REVQVACRHG  240
VEVAILMGGR NVFCTDSWVA ATGTDRASTH LIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260GGRRGRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28975.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.11e-173uncharacterized protein LOC109744472
TrEMBLA0A3B6DD421e-172A0A3B6DD42_WHEAT; Uncharacterized protein
TrEMBLA0A453BX881e-172A0A453BX88_AEGTS; Uncharacterized protein
STRINGMLOC_28975.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-75Trihelix family protein