PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_28634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 261aa MW: 28985.3 Da PI: 4.8761 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.4 | 6.4e-20 | 128 | 248 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkak 65 Yn+Y+ ++GFs+++++s+k ++++e +k++fvC+k k++ ++ t+k+r++ + +tg kak MLOC_28634.1 128 YNSYSLQIGFSIKMNTSRKATKTRELIKQQFVCNKFRKPKVDDGGeekipmldeivdetkdddqdedivfldddsktkkTTKKRKRDTILQTGFKAK 224 ***********************************999999887789*****************************99989999999999******* PP FAR1 66 lkvkkekdgkwevtkleleHnHela 90 ++vk+ dg+wev++++ eHnH+l+ MLOC_28634.1 225 MVVKLI-DGRWEVIHFVGEHNHPLV 248 ******.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-18 | 128 | 248 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MIDLNEQPDE NNGDPVYCTQ HVAGNTEFVV ESPNPPMIQK VSVAAAEGIF TDGHSSLMMA 60 APGNTQIPEA VASESDGHTL DGTGAPSNTG GTVANGFGDE NDDEAWSQPK EPRVGMRFDT 120 LEGAKNNYNS YSLQIGFSIK MNTSRKATKT RELIKQQFVC NKFRKPKVDD GGEEKIPMLD 180 EIVDETKDDD QDEDIVFLDD DSKTKKTTKK RKRDTILQTG FKAKMVVKLI DGRWEVIHFV 240 GEHNHPLVDK PSLTKYLRSH Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_28634.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194049.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M0VHI3 | 0.0 | M0VHI3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_28634.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-10 | FAR1-related sequence 5 |