PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_2787.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 262aa MW: 28713.3 Da PI: 7.448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_2787.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	90	109	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ MLOC_2787.1 90 FSCPVCFKTFNRYNNMQMHM 109 89*****************9 PP
2	zf-C2H2	11.8	0.00074	176	196	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ MLOC_2787.1 176 CRRCGKAFAVKGDWRTHEKNC 196 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.86E-5	86	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-6	90	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	90	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.52E-6	156	194	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-5	160	194	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	174	194	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDVEAAWSTS TDDAAVALRI GLPSAEADLL SGLSGRAAEE DEEEEDDCKP GGGHEEVPLG 60 FSSTAPIGRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP 120 ESLRGVQPTA MLRLPCYCCA AGCRNNIDHP RAKPLKDFRT LQTHYKRKHG LKPFLCRRCG 180 KAFAVKGDWR THEKNCGKLW YCLCGSEFKH KRSLKDHARA FGHGHGAFGC NGAAGGDGGF 240 DDDDEGAVSE IEHDVVCGAA PR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_2787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256244	0.0	AC256244.1 Hordeum vulgare clone HV_Mba442-A05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187283.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3B6SIP5	0.0	A0A3B6SIP5_WHEAT; Uncharacterized protein
TrEMBL	A0A446YCJ3	0.0	A0A446YCJ3_TRITD; Uncharacterized protein
STRING	MLOC_2787.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]