PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_2737.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 871aa    MW: 95884.3 Da    PI: 7.272
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_2737.11genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96e-2276174190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerr..........traetrtgCkaklkvkkek.dgkwevtklel 83 
                   +fY++YA+++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk    t    +          + + +rtgC a+l++k+    + ++vt+++ 
  MLOC_2737.11  76 EFYKAYATRLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeT----NvtvaapppppRCPDSRTGCLASLTIKLLPsANAFRVTEFVA 167
                   6*****************99997666.****************99994440....235566666668899*************99899********* PP

          FAR1  84 eHnHela 90 
                   eHnH+la
  MLOC_2737.11 168 EHNHQLA 174
                   *****97 PP

2FAR1682.3e-21222321290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                   fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++               + r   + trtgC+a++++k +   +++v+++  eH
  MLOC_2737.11 222 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHDslasistsagagaPGTPRPGPPPTRTGCQARMVIKITPCRTYRVANFFAEH 316
                   9*************9976665..999***************999999****999998876677778899**************************** PP

          FAR1  86 nHela 90 
                   nH+la
  MLOC_2737.11 317 NHPLA 321
                   ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-1976174IPR004330FAR1 DNA binding domain
PfamPF031012.7E-18222321IPR004330FAR1 DNA binding domain
PfamPF105511.0E-22410503IPR018289MULE transposase domain
PfamPF044346.8E-6678724IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.014678725IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6700727IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MSTTAHTPAS LSGDSSPTTS GSSSPSSAAA VAGSYEPALL GQAISISTPA ASGDDAAVPT  60
SPQIGMYFET EDDAYEFYKA YATRLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDETNVTVA APPPPPRCPD SRTGCLASLT IKLLPSANAF RVTEFVAEHN HQLASAASAV  180
SLAMIPSSSS HRSIAAAASL PDPRDGPSPE MHFETEDDAY AFYNRYAEHV GFSVRRSYKK  240
RKRGVIVSRI FVCSREGVSD RAKHDSLASI STSAGAGAPG TPRPGPPPTR TGCQARMVIK  300
ITPCRTYRVA NFFAEHNHPL ANSETVHKLR SHKMRARVHE LGAGELHRRK QGKGVQLGDA  360
GAALEYMEGL QVGNPSVYYA VGMAPDGNSA VNFFWADAKS IIDFRSFGDV VCFDTTYGLN  420
VYGRPFALFV GVDNHKQLLV FGAALLYDDS IQSLKWVFQA FADAMRDRQP KTVLIDEHSE  480
CAIAAAEVWP ESNHCASVWH IYHSSKRHLK QVFESSKGFG NALSQCLFDC EDEMEFLSAW  540
EKLIEKHDIG ESEWLGRLFL EKEKWALPYT RTMFSADILT TLRKDNMINE LKRELSEQED  600
ILLFFKRYET MLEEHRSKKL QADVDGNQVT LPIPSLRILK QSSNAYTPEA FKMFQGEFEA  660
YMNCMSFPCG AVGTVSEYKI TLDEKPSEGI VKFDALDGLA TCSCRKFESV GIQCCHVLKV  720
LDLKNIKELP EQYILKRWRK DARSVKMGEE PYSGSSSIMQ SSLDVRFSNM CRMVSLIASR  780
AAKSEEAMSY IESQSSVLVK HLDDILQTGY PENGNHAVAS SSQAISFVGN HPDHTTQARA  840
VAHTENGLIS LFGISAYPES SGQLNGSVGS L
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_2737.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179680.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_020179681.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_020179682.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_020179683.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A287HZH20.0A0A287HZH2_HORVV; Uncharacterized protein
TrEMBLA0A287HZL20.0A0A287HZL2_HORVV; Uncharacterized protein
TrEMBLA0A287HZV00.0A0A287HZV0_HORVV; Uncharacterized protein
STRINGMLOC_2737.90.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-79FAR1-related sequence 5