PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_2737.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 871aa MW: 95884.3 Da PI: 7.272 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 6e-22 | 76 | 174 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerr..........traetrtgCkaklkvkkek.dgkwevtklel 83 +fY++YA+++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk t + + + +rtgC a+l++k+ + ++vt+++ MLOC_2737.10 76 EFYKAYATRLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeT----NvtvaapppppRCPDSRTGCLASLTIKLLPsANAFRVTEFVA 167 6*****************99997666.****************99994440....235566666668899*************99899********* PP FAR1 84 eHnHela 90 eHnH+la MLOC_2737.10 168 EHNHQLA 174 *****97 PP | |||||||
2 | FAR1 | 68 | 2.3e-21 | 222 | 321 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + r + trtgC+a++++k + +++v+++ eH MLOC_2737.10 222 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHDslasistsagagaPGTPRPGPPPTRTGCQARMVIKITPCRTYRVANFFAEH 316 9*************9976665..999***************999999****999998876677778899**************************** PP FAR1 86 nHela 90 nH+la MLOC_2737.10 317 NHPLA 321 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-19 | 76 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.7E-18 | 222 | 321 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-22 | 410 | 503 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 6.8E-6 | 678 | 724 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.014 | 678 | 725 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 700 | 727 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence Send to blast |
MSTTAHTPAS LSGDSSPTTS GSSSPSSAAA VAGSYEPALL GQAISISTPA ASGDDAAVPT 60 SPQIGMYFET EDDAYEFYKA YATRLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDETNVTVA APPPPPRCPD SRTGCLASLT IKLLPSANAF RVTEFVAEHN HQLASAASAV 180 SLAMIPSSSS HRSIAAAASL PDPRDGPSPE MHFETEDDAY AFYNRYAEHV GFSVRRSYKK 240 RKRGVIVSRI FVCSREGVSD RAKHDSLASI STSAGAGAPG TPRPGPPPTR TGCQARMVIK 300 ITPCRTYRVA NFFAEHNHPL ANSETVHKLR SHKMRARVHE LGAGELHRRK QGKGVQLGDA 360 GAALEYMEGL QVGNPSVYYA VGMAPDGNSA VNFFWADAKS IIDFRSFGDV VCFDTTYGLN 420 VYGRPFALFV GVDNHKQLLV FGAALLYDDS IQSLKWVFQA FADAMRDRQP KTVLIDEHSE 480 CAIAAAEVWP ESNHCASVWH IYHSSKRHLK QVFESSKGFG NALSQCLFDC EDEMEFLSAW 540 EKLIEKHDIG ESEWLGRLFL EKEKWALPYT RTMFSADILT TLRKDNMINE LKRELSEQED 600 ILLFFKRYET MLEEHRSKKL QADVDGNQVT LPIPSLRILK QSSNAYTPEA FKMFQGEFEA 660 YMNCMSFPCG AVGTVSEYKI TLDEKPSEGI VKFDALDGLA TCSCRKFESV GIQCCHVLKV 720 LDLKNIKELP EQYILKRWRK DARSVKMGEE PYSGSSSIMQ SSLDVRFSNM CRMVSLIASR 780 AAKSEEAMSY IESQSSVLVK HLDDILQTGY PENGNHAVAS SSQAISFVGN HPDHTTQARA 840 VAHTENGLIS LFGISAYPES SGQLNGSVGS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_2737.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179680.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020179681.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020179682.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020179683.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A287HZH2 | 0.0 | A0A287HZH2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287HZL2 | 0.0 | A0A287HZL2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287HZV0 | 0.0 | A0A287HZV0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_2737.9 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-79 | FAR1-related sequence 5 |