PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_26177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 24156.7 Da PI: 7.6771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.8 | 8.1e-21 | 21 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell dav+++G ++W+ I+++++ gRt+k+c++rw + MLOC_26177.1 21 KGSWSPEEDELLRDAVARHGARNWTVISAEIP-GRTGKSCRLRWCNQ 66 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T++Ed + + + ++G++ W+tIar+++ gRt++++k++w++ MLOC_26177.1 73 RRAFTPDEDRVIFEEHSKHGNK-WATIARKLQ-GRTDNSVKNHWNST 117 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.607 | 16 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-30 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-17 | 20 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-20 | 21 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 22 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.08E-17 | 23 | 65 | No hit | No description |
PROSITE profile | PS51294 | 20.94 | 72 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-11 | 75 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 75 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPDGGGGGGG GDGSDGAGRI KGSWSPEEDE LLRDAVARHG ARNWTVISAE IPGRTGKSCR 60 LRWCNQLSPG VHRRAFTPDE DRVIFEEHSK HGNKWATIAR KLQGRTDNSV KNHWNSTLRK 120 RRRAAAAAAA AAAGNGPVFA PVAAMSFQSV DLTKGGEDDY EDSDGSVEPP AKRQHPDVGG 180 AVPPAVKNLD DQAPPPPDPP TSLSLSLPGT GASAVTPPAP PAPATAPTTT MGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-34 | 20 | 121 | 6 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 122 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_26177.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184105.1 | 1e-87 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-49 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A287FUD1 | 1e-165 | A0A287FUD1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_26177.1 | 1e-167 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-47 | myb domain protein 70 |
Publications ? help Back to Top | |||
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