PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_26140.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 184aa    MW: 19898.7 Da    PI: 10.9537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_26140.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.21e-135099355
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr ++ +g+ ++eI++ + ng   r++lg+f ++e A  a+++a+ +l+g
  MLOC_26140.1 50 FRGVRKRP-WGKHAVEIWESTRNG--VRVWLGTFESPEAATLAYDQAAFALRG 99
                  8*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-2849113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2549108IPR001471AP2/ERF domain
PROSITE profilePS5103220.52149107IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1950108IPR016177DNA-binding domain
PfamPF008471.3E-95099IPR001471AP2/ERF domain
CDDcd000181.84E-2150109No hitNo description
PRINTSPR003671.8E-115061IPR001471AP2/ERF domain
PRINTSPR003671.8E-1189109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MLPPLPSDTS DADEKLLLNV LSRHQGASVH KAATVALPLK QGAADAERAF RGVRKRPWGK  60
HAVEIWESTR NGVRVWLGTF ESPEAATLAY DQAAFALRGG AAVLNFPADQ VRRSLEGTEE  120
GVRGVSPVLA LKRRHSMRSR KAAASAAACR KARGRPEGVV MALEDLGAEY TWSWSSSMAL  180
ARAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21501071572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_26140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178467.11e-76ethylene-responsive transcription factor 1B-like
TrEMBLA0A287HZB91e-127A0A287HZB9_HORVV; Uncharacterized protein
TrEMBLA0A287HZH41e-127A0A287HZH4_HORVV; Uncharacterized protein
STRINGMLOC_26140.11e-129(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-37ethylene response factor 1