PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_25818.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LSD
Protein Properties Length: 76aa    MW: 8579.03 Da    PI: 7.0018
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_25818.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.39.5e-12630125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  CggCrtlL+Y r A  VRC++C tV
  MLOC_25818.1  6 CGGCRTLLMYIRSAYTVRCSCCSTV 30
                  ***********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.2E-14333IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-9630IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MAQFICGGCR TLLMYIRSAY TVRCSCCSTV NLVRPGNANS ASYYGISSYE LSIFMLLIHE  60
NFNLSEECGI LLIYCW
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_25818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5452311e-97EU545231.1 Hordeum vulgare subsp. vulgare clone ABC06454 LSD1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287E3S25e-48A0A287E3S2_HORVV; Uncharacterized protein
STRINGMLOC_25818.12e-48(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.74e-13LSD family protein