PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_25818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LSD | ||||||||
Protein Properties | Length: 76aa MW: 8579.03 Da PI: 7.0018 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.3 | 9.5e-12 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y r A VRC++C tV MLOC_25818.1 6 CGGCRTLLMYIRSAYTVRCSCCSTV 30 ***********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.2E-14 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-9 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MAQFICGGCR TLLMYIRSAY TVRCSCCSTV NLVRPGNANS ASYYGISSYE LSIFMLLIHE 60 NFNLSEECGI LLIYCW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_25818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU545231 | 1e-97 | EU545231.1 Hordeum vulgare subsp. vulgare clone ABC06454 LSD1-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A287E3S2 | 5e-48 | A0A287E3S2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_25818.1 | 2e-48 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 4e-13 | LSD family protein |