PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_25708.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 29271.5 Da PI: 10.6108 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 11 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv +yL +k+ g + ++ +vd++k+ePwdLp+ + + kewyf+s rdkkyatg+r+nrat+sgyWkatgk MLOC_25708.2 11 LPPGFRFHPRDDELVLDYLSRKLGGGAgpavA---SiygcpAMVDVDLNKTEPWDLPEIACIGGKEWYFYSLRDKKYATGQRTNRATESGYWKATGK 104 79***********************9965541...14555479**************7666789********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ + + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r MLOC_25708.2 105 DRLISR-KGLLVGMRKTLVFYEGRAPKGKKTEWVMHEFRK 143 ****99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-53 | 2 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.034 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 12 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSLSMVEAR LPPGFRFHPR DDELVLDYLS RKLGGGAGPA VASIYGCPAM VDVDLNKTEP 60 WDLPEIACIG GKEWYFYSLR DKKYATGQRT NRATESGYWK ATGKDRLISR KGLLVGMRKT 120 LVFYEGRAPK GKKTEWVMHE FRKEGQGDHM KLPLKVIVII IIHVNQKFIL LVDTPLLSPY 180 SIMHHMNRKC KKFHPKKIVR KLQNYILVAL FFKGGEGTSK MKLGRFGFTC GRFYEKYGLK 240 KQKTFGSRDI RMWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-47 | 5 | 142 | 9 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_25708.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365398 | 0.0 | AK365398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2033O22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563412.1 | 1e-100 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-67 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A287XPM2 | 1e-151 | A0A287XPM2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_25708.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-70 | NAC family protein |