PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_24269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | TCP | ||||||||
Protein Properties | Length: 147aa MW: 15225.1 Da PI: 7.0306 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 83.9 | 3.9e-26 | 1 | 73 | 24 | 96 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++++ ss +++ ++ aa+ +++ MLOC_24269.1 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTSSPSSLRPHAHAQPLAASPHHP 73 9*****************************************9999988844434443333333333333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.861 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-20 | 1 | 64 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTTPASFS TSSPSSLRPH 60 AHAQPLAASP HHPHHHLPHA APFILGKRVR DDDDNGSGNG APSGEATVAA ASMGPAPGFW 120 ALPARGDFGQ MWSFAPPPEM MGAAPGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_24269.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374835 | 0.0 | AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185649.1 | 2e-69 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 7e-49 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A287V930 | 2e-98 | A0A287V930_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287V967 | 1e-98 | A0A287V967_HORVV; Uncharacterized protein | ||||
STRING | MLOC_24269.1 | 1e-101 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-32 | TCP family protein |