PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_2356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LSD | ||||||||
Protein Properties | Length: 118aa MW: 12925.2 Da PI: 8.2057 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.4 | 4.1e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Cr +L+YP GApsV+Ca+C ++ MLOC_2356.1 7 CHRCRRVLAYPSGAPSVCCAMCRAI 31 **********************986 PP | |||||||
2 | zf-LSD1 | 40.6 | 4.1e-13 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV MLOC_2356.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.6E-10 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.9E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.1E-15 | 45 | 75 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.5E-11 | 48 | 72 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPGNA NSASYSGISS YELSIFMLLI HKHFNLSEEF GILLIYCW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_2356.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU545231 | 1e-132 | EU545231.1 Hordeum vulgare subsp. vulgare clone ABC06454 LSD1-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196161.1 | 4e-49 | protein LOL3-like isoform X1 | ||||
Swissprot | Q6ASS2 | 1e-43 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | M0VDF3 | 3e-81 | M0VDF3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_2356.1 | 5e-82 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-26 | LSD family protein |
Publications ? help Back to Top | |||
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