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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_23443.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
C2H2 |
| Protein Properties |
Length: 376aa MW: 41045.2 Da PI: 9.0221 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_23443.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.4 | 3.1e-07 | 192 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
MLOC_23443.1 192 HYCQVCGKGFKRDANLRMHMRAH 214
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MFPDAGASPY FLQNQQHQQQ LFHGIDGIGM DAAFPGDAGL AVPDTHRNTL MYNMSVLKDK 60
VQQLQPLVGR GQVVDTVVPR ASAVVQEIIA AATSMMYVLQ HPYGPGALTS GNSASTREGA 120
VDGRAKNGTA DDDQDQQAMV DAMRLWQQQQ QQNHGGGHDI SMSTESSSMQ GTTTVDTIIE 180
LDAAELLAKY THYCQVCGKG FKRDANLRMH MRAHGDKYKS KAALANPTRL FATSGEDASA 240
STAGTGRRNK YSCPQDGCRW NRRHAKFQPL KSIICVKNHY KRSHCPKMYA CNRCNHKHFS 300
VLSDLRTHEK HCGDHRWICS CGTTFSRKDK LAGHVSLFAG HQPVAPPASG RHGKRSLLST 360
SSSDLVGNCA TGFSIT
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 1e-95 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 1e-95 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 1e-95 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 1e-95 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-95 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
