PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_23250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ARR-B | ||||||||
Protein Properties | Length: 571aa MW: 63062.2 Da PI: 5.477 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.2e-26 | 177 | 230 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl MLOC_23250.2 177 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 230 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 58.6 | 3.4e-20 | 22 | 107 | 25 | 109 |
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +v+++ ++ ale+l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ Ga d+l Kp+ ++el++ MLOC_23250.2 22 VVTTCGLARVALEILRERKnrFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRN 107 6888888999*****777777**********************6654.8***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 28.554 | 1 | 113 | IPR001789 | Signal transduction response regulator, receiver domain |
SMART | SM00448 | 1.9E-11 | 2 | 109 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.40E-21 | 22 | 112 | No hit | No description |
PIRSF | PIRSF036392 | 1.6E-140 | 22 | 562 | IPR017053 | Response regulator B-type, plant |
Pfam | PF00072 | 6.0E-17 | 22 | 108 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.28E-23 | 23 | 119 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.1E-30 | 23 | 131 | No hit | No description |
SuperFamily | SSF46689 | 1.08E-17 | 174 | 233 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 175 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-23 | 177 | 230 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-8 | 179 | 229 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MPAACLNYPA KIGWGRSLLI AVVTTCGLAR VALEILRERK NRFDIVISDV NMPDMDGFKL 60 LEHIGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV RMKELRNIWQ HVYRKKMHEV 120 KEIEGHDSCD DLQILRYGFE GFDEKGLFMT VDSDPTRKRK DVDHGDQDSS DGATAKKARV 180 VWSVDLHQKF VNAVNQIGFD KVGPKKILDL MNVPGLTREN VASHLQKYRL YLGRLQKQNE 240 ERALGSARQD FSTKGPSSEN LNLRSSFQEQ PSTISSGYPH APQKMQGQSS VSDSQLEDTK 300 RTVPLPASDR SINSVSSAAE PQNVAGVSPM GGVLSFKGLP VNQDRKPSET MILECQAWNG 360 GVPAKQFMQY PKHNHARCDL LGDYACLPKP DLEHPTAPGH LFTPPSLISI MSCSTEMDAR 420 NFSDVKPALL DCIKSFSPAL TCTADSVSVQ LSDSVVTSTD AADRRFSSVQ GLPSTKDCYF 480 DQTSNQGSWL RSQEEPSVIC GADFASLPED LSGYSLQGGV SSENVGLGSI DLFHYNDAMI 540 LSGLQSNWYD DQDHFSSETT DYPLMDGCLF A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-18 | 176 | 235 | 4 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_23250.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147288.1 | 0.0 | two-component response regulator ORR26-like | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A287M5H7 | 0.0 | A0A287M5H7_HORVV; Two-component response regulator | ||||
STRING | MLOC_23250.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 5e-91 | response regulator 11 |
Publications ? help Back to Top | |||
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