PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23250.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 557aa    MW: 61746.6 Da    PI: 5.363
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23250.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.9e-26163216155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  MLOC_23250.1 163 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 216
                   68*******************.9*******************************8 PP
2Response_reg60.49.6e-2129318109
                   HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  18 lekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  MLOC_23250.1   2 LRKCSY-EVTTCGLARVALEILRERKnrFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRN 93 
                   556678.9999999********877777**********************6654.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.812199IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.1E-10195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.5E-341117No hitNo description
CDDcd001563.91E-22198No hitNo description
SuperFamilySSF521721.28E-251105IPR011006CheY-like superfamily
PIRSFPIRSF0363921.7E-1461548IPR017053Response regulator B-type, plant
PfamPF000721.5E-17294IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466899.86E-18160219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28161220IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-23163216IPR006447Myb domain, plants
PfamPF002498.6E-8165215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLRKCSYEVT TCGLARVALE ILRERKNRFD IVISDVNMPD MDGFKLLEHI GLEMDLPVIM  60
MSIDGETSRV MKGVQHGACD YLLKPVRMKE LRNIWQHVYR KKMHEVKEIE GHDSCDDLQI  120
LRYGFEGFDE KGLFMTVDSD PTRKRKDVDH GDQDSSDGAT AKKARVVWSV DLHQKFVNAV  180
NQIGFDKVGP KKILDLMNVP GLTRENVASH LQKYRLYLGR LQKQNEERAL GSARQDFSTK  240
GPSSENLNLR SSFQEQPSTI SSGYPHAPQK MQGQSSVSDS QLEDTKRTVP LPASDRSINS  300
VSSAAEPQNV AGVSPMGGVL SFKGLPVNQD RKPSETMILE CQAWNGGVPA KQFMQYPKHN  360
HARCDLLGDY ACLPKPDLEH PTAPGHLFTP PSLISIMSCS TEMDARNFSD VKPALLDCIK  420
SFSPALTCTA DSVSVQLSDS VVTSTDAADR RFSSVQGLPS TKDCYFDQTS NQGSWLRSQE  480
EPSVICGADF ASLPEDLSGY SLQGGVSSEN VGLGSIDLFH YNDAMILSGL QSNWYDDQDH  540
FSSETTDYPL MDGCLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-18162221463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_23250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147288.10.0two-component response regulator ORR26-like
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A287M5G10.0A0A287M5G1_HORVV; Two-component response regulator
STRINGMLOC_23250.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-97response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]