PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_23224.1 | ||||||||
Common Name | MYB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 20998 Da PI: 9.154 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 5 | 33 | 18 | 47 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47 +lG ++W++Ia +++ gRt++++k++w+++ MLOC_23224.1 5 LLGARRWSLIAGRLP-GRTDNEIKNYWNTH 33 5899***********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.273 | 1 | 38 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.3E-8 | 5 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-8 | 5 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-8 | 5 | 34 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-14 | 6 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
HVLFLLGARR WSLIAGRLPG RTDNEIKNYW NTHIRRKLTS RGIDPVTHRA INSDHAASNI 60 TISFESAQRD DKGAVFRRDA EPAKAAAAAA AISHHVDHHH RSNPQLDWGQ GKPLKCPDLN 120 LDLCISPPIH EDPMVDTKPV VKREAGVGVG VGVVGLCFSC SMGLPRSSDC KCSSFMGLRT 180 AMLDFRSIEM K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_23224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361986 | 0.0 | AK361986.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194822.1 | 1e-107 | myb-related protein Hv1 | ||||
Swissprot | P20026 | 1e-113 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A0A287S1Z0 | 1e-112 | A0A287S1Z0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_23224.1 | 1e-140 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-27 | myb domain protein 4 |
Publications ? help Back to Top | |||
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