PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23044.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 161aa    MW: 17764.6 Da    PI: 4.6308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23044.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18148556
           AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++aa+ +l+ge
  MLOC_23044.1  1 GVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDAAEEAALAYDAAAFRLRGE 48
                  9***99.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-33161IPR001471AP2/ERF domain
CDDcd000181.89E-18157No hitNo description
Gene3DG3DSA:3.30.730.104.7E-30156IPR001471AP2/ERF domain
PROSITE profilePS5103222.155155IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-21156IPR016177DNA-binding domain
PfamPF008471.1E-12148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDA AEEAALAYDA AAFRLRGESA RLNFPELRRG  60
GQHHGPPLDA AIDAKLHSIC HGEDPPQSQS NATPTPTSFP DVKSEPVCSV SESSSSADGE  120
VSSCSDDVPE MQLLDFSEAP WDEHLLSKYP SLEIDWDAIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18155863ATERF1
3gcc_A1e-18155863ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_23044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588230.0AK358823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1083M18.
GenBankAK3701700.0AK370170.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169042.16e-85ethylene-responsive transcription factor RAP2-4-like
SwissprotO656652e-46ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E45e-46RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A287PM971e-114A0A287PM97_HORVV; Uncharacterized protein
TrEMBLF2E1Z91e-114F2E1Z9_HORVV; Predicted protein
STRINGMLOC_23044.11e-115(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-30related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]