PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_22988.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 516aa    MW: 57229.7 Da    PI: 10.2677
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_22988.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix445.8e-1444923787
      trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                  k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  MLOC_22988.2 44 KLAELGYKRSSKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFQELEA 92
                  4589******************************866665..******985 PP
2trihelix110.41.1e-34416501187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  MLOC_22988.2 416 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 501
                   8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-104493No hitNo description
PROSITE profilePS500907.073409473IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-4414472IPR009057Homeodomain-like
PfamPF138372.2E-22415502No hitNo description
CDDcd122033.11E-28416480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MLPLSLPLSR HSLSFRLLVS FVRRGREREH TRTHARSFFF FFLKLAELGY KRSSKKCKEK  60
FENVHKYYKR TKEGRAGRQD GKSYRFFQEL EALHAATAAS QQQQHQHQEQ LQLAGVAPPP  120
QMHAFSSPQP MSAMPPPPGP IQPAPISSAA PAPAVEPPQP PPVSLQGLSF PSMSDSESDD  180
DDASEDDDMT AETGGSPDGV GKRKRGGSKK MMAFFEGLMK QVIQRQEEMQ QRFLETMEKR  240
EAERTAREEA WRRQEVARLN REQEQLAQER AAAASRDASI IAFLQRIGGQ TVHVPPVVIP  300
MPTPMQAQTP PPAKKPRQQL PPPPPSQATH HPQPKPIPAA PLQQQPPALQ QQPPPQPPQH  360
KETTHDEAGT PRSAPAPTSA GLSLALVPVA TEQHVGEAAG LGLGGGESGG GASSSRWPKT  420
EVHALIQLRM DMDNRYQENG PKGPLWEEIS AGMRRLGYSR NSKRCKEKWE NINKYFKKVK  480
ESNKRRPEDS KTCPYFHQLE AIYRKKHNGG GGGGAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058KRSSKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_22988.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200394.10.0trihelix transcription factor GTL1-like isoform X2
SwissprotQ391173e-47TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287IYM20.0A0A287IYM2_HORVV; Uncharacterized protein
STRINGMLOC_22988.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-49Trihelix family protein