PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_22988.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 529aa    MW: 57972.2 Da    PI: 9.8034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_22988.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.71.2e-3121105187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+++e+laLi++r+em++++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  MLOC_22988.1  21 RWPREETLALIRIRSEMDTTFRDATLKGPLWEEVSRKLAELGYKRSSKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFQELEA 105
                   8*********************************************************************866665..******985 PP
2trihelix110.41.1e-34429514187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  MLOC_22988.1 429 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 514
                   8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-41880IPR001005SANT/Myb domain
PROSITE profilePS500907.2242078IPR017877Myb-like domain
PfamPF138371.8E-2220106No hitNo description
CDDcd122035.98E-282085No hitNo description
PROSITE profilePS500907.073422486IPR017877Myb-like domain
SMARTSM007170.018426488IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-4427485IPR009057Homeodomain-like
PfamPF138372.3E-22428515No hitNo description
CDDcd122033.17E-27429493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLGDSGGNSG GGGVLGSGGN RWPREETLAL IRIRSEMDTT FRDATLKGPL WEEVSRKLAE  60
LGYKRSSKKC KEKFENVHKY YKRTKEGRAG RQDGKSYRFF QELEALHAAT AASQQQQHQH  120
QEQLQLAGVA PPPQMHAFSS PQPMSAMPPP PGPIQPAPIS SAAPAPAVEP PQPPPVSLQG  180
LSFPSMSDSE SDDDDASEDD DMTAETGGSP DGVGKRKRGG SKKMMAFFEG LMKQVIQRQE  240
EMQQRFLETM EKREAERTAR EEAWRRQEVA RLNREQEQLA QERAAAASRD ASIIAFLQRI  300
GGQTVHVPPV VIPMPTPMQA QTPPPAKKPR QQLPPPPPSQ ATHHPQPKPI PAAPLQQQPP  360
ALQQQPPPQP PQHKETTHDE AGTPRSAPAP TSAGLSLALV PVATEQHVGE AAGLGLGGGE  420
SGGGASSSRW PKTEVHALIQ LRMDMDNRYQ ENGPKGPLWE EISAGMRRLG YSRNSKRCKE  480
KWENINKYFK KVKESNKRRP EDSKTCPYFH QLEAIYRKKH NGGGGGGAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371KRSSKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_22988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200394.10.0trihelix transcription factor GTL1-like isoform X2
SwissprotQ391178e-73TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287IYM40.0A0A287IYM4_HORVV; Uncharacterized protein
STRINGMLOC_22988.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-49Trihelix family protein