PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_22698.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | DBB | ||||||||
Protein Properties | Length: 240aa MW: 25146.8 Da PI: 4.9494 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.7 | 4.8e-08 | 19 | 56 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 r C+ + + ++lfC+ + +lC+ C H + H MLOC_22698.2 19 RACDSCATEAARLFCRADAAFLCAGCDARAHGSgsrHA 56 67**************************9994366675 PP | |||||||
2 | zf-B_box | 25.8 | 2.3e-08 | 58 | 103 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC++C +H H++vp+ MLOC_22698.2 58 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 103 679*****************************66888889999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.4E-6 | 16 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.651 | 16 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.20E-7 | 19 | 60 | No hit | No description |
Pfam | PF00643 | 2.3E-6 | 19 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.509 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-6 | 58 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-7 | 59 | 103 | No hit | No description |
SMART | SM00336 | 1.4E-8 | 61 | 103 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEGEEKPVVG GAYWGVGARA CDSCATEAAR LFCRADAAFL CAGCDARAHG SGSRHARVWL 60 CEVCEHAPAA VTCKADAAVL CASCDADIHA ANPLARRHER VPVAPFFGAA ADAHKPFPSS 120 GAQAGAAASA EDDGSNDAEA ASWLLPEPDH KDGANGATAD VFFADSDHYL DLDFARSMDD 180 IKAISVQLNG QPEIDLNGGN KGFYSDHSMN HSVRIILYIP VMHEQRGAAS VLTSDGHLAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_22698.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF490474 | 0.0 | AF490474.1 Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein (CO4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189579.1 | 1e-145 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q9FHH8 | 8e-46 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A453CBF9 | 1e-154 | A0A453CBF9_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_22698.1 | 1e-153 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 3e-45 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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