PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_22698.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 303aa    MW: 32212.7 Da    PI: 6.1302
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_22698.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-081956438
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                  r C+ +  + ++lfC+ +  +lC+ C    H +   H 
  MLOC_22698.1 19 RACDSCATEAARLFCRADAAFLCAGCDARAHGSgsrHA 56
                  67**************************9994366675 PP
2zf-B_box25.33.3e-0858103342
      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                    + C+ +e+ ++   C+ +   lC++C   +H        H++vp+
  MLOC_22698.1  58 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 103
                   679*****************************66888889999986 PP
3CCT70.25.2e-24236278143
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                   Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+
  MLOC_22698.1 236 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 278
                   9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-61660IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6511660IPR000315B-box-type zinc finger
CDDcd000215.13E-71960No hitNo description
PfamPF006433.3E-61955IPR000315B-box-type zinc finger
PROSITE profilePS5011910.50956103IPR000315B-box-type zinc finger
PfamPF006434.6E-658103IPR000315B-box-type zinc finger
CDDcd000216.98E-859103No hitNo description
SMARTSM003361.4E-861103IPR000315B-box-type zinc finger
PfamPF062035.4E-18236278IPR010402CCT domain
PROSITE profilePS5101716.936236278IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEGEEKPVVG GAYWGVGARA CDSCATEAAR LFCRADAAFL CAGCDARAHG SGSRHARVWL  60
CEVCEHAPAA VTCKADAAVL CASCDADIHA ANPLARRHER VPVAPFFGAA ADAHKPFPSS  120
GAQAGAAASA EDDGSNDAEA ASWLLPEPDH KDGANGATAD VFFADSDHYL DLDFARSMDD  180
IKAISVQLNG QPEIDLNGGN KGFYSDHSMN HSLSSSEAAV VPDAAAAPVV SRGREREARL  240
MRYREKRKSR RFEKTIRYAS RKAYAETRPR VKGRFAKRTG TADADALEEH EEMYSSAAAA  300
PAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_22698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4904750.0AF490475.1 Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein (CO4) mRNA, complete cds.
GenBankAK3667290.0AK366729.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189579.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ9FHH82e-75COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLQ8L4X30.0Q8L4X3_HORVV; CONSTANS-like protein
STRINGMLOC_22698.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.15e-59CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]