PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_21966.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 32701.9 Da PI: 5.3897 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.9 | 1.1e-28 | 22 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 lp+G++F+Ptd el+ e+L+ kv + ++ +i+e+ +i++++P++Lp vk + +fF+k +++y gkrk+r+ + + MLOC_21966.2 22 LPAGVKFDPTDLELL-EHLEGKVGRAASHVLXxxfipTIEEAeGICYTHPENLP-GVKLDGIASHFFHKISNAYDVGKRKRRKishsdhtvcDEILR 116 799************.99*****999944433344435888878**********.566677899******************867777665433557 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 W++tgk++++l+++g +g kk+Lv+y ++ k++kt+W mh+y+l MLOC_21966.2 117 WHKTGKSRSILDSNGVIKGWKKILVLYigsRKGGGKTVKTNWRMHQYHL 165 ***************************443333345579********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-33 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.257 | 22 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-12 | 23 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MECPNCKYCI DNTDVLSQWP GLPAGVKFDP TDLELLEHLE GKVGRAASHV LXXXFIPTIE 60 EAEGICYTHP ENLPGVKLDG IASHFFHKIS NAYDVGKRKR RKISHSDHTV CDEILRWHKT 120 GKSRSILDSN GVIKGWKKIL VLYIGSRKGG GKTVKTNWRM HQYHLGVDQD EKQEELVVSK 180 VFYQLESNNA GENDPTTPIT YLPQPRRPNG SPSTTEQNQE GESRMSTVRE AVEWLAGSSS 240 HTVEDAVVSG LDEDLSRGRT PDAACPDPEG QLLPLDAEAP QGFADDLGAP PDISLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_21966.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187618.1 | 1e-173 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-64 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A287ING6 | 0.0 | A0A287ING6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_21966.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 8e-67 | NAC family protein |