PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_21966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32255.3 Da PI: 5.5715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92 | 1e-28 | 18 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 lp+G++F+Ptd el+ e+L+ kv + ++ +i+e+ +i++++P++Lp vk + +fF+k +++y gkrk+r+ + + MLOC_21966.1 18 LPAGVKFDPTDLELL-EHLEGKVGRAASHVLXxxfipTIEEAeGICYTHPENLP-GVKLDGIASHFFHKISNAYDVGKRKRRKishsdhtvcDEILR 112 799************.99*****999944433344435888878**********.566677899******************867777665433557 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 W++tgk++++l+++g +g kk+Lv+y ++ k++kt+W mh+y+l MLOC_21966.1 113 WHKTGKSRSILDSNGVIKGWKKILVLYigsRKGGGKTVKTNWRMHQYHL 161 ***************************443333345579********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-32 | 9 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.257 | 18 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-12 | 19 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
CKYCIDNTDQ VLSQWPGLPA GVKFDPTDLE LLEHLEGKVG RAASHVLXXX FIPTIEEAEG 60 ICYTHPENLP GVKLDGIASH FFHKISNAYD VGKRKRRKIS HSDHTVCDEI LRWHKTGKSR 120 SILDSNGVIK GWKKILVLYI GSRKGGGKTV KTNWRMHQYH LGVDQDEKQE ELVVSKVFYQ 180 LESNNAGEND PTTPITYLPQ PRRPNGSPST TEQNQEGESR MSTVREAVEW LAGSSSHTVE 240 DAVVSGLDED LSRGRTPDAA CPDPEGQLLP LDAEAPQGFA DDLGAPPDIS LP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 97 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_21966.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 1e-177 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187618.1 | 1e-167 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-60 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A287ING6 | 0.0 | A0A287ING6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_21966.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-62 | NAC family protein |