PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21759.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 331aa    MW: 35102.7 Da    PI: 9.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21759.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14130181155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  MLOC_21759.1 130 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQRGDQASIVGGAINFVKELE 181
                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-14128185No hitNo description
Gene3DG3DSA:4.10.280.104.5E-14128185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.075129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-17129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-11135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAAVFSR AAAARLFGRC AMAGAGGAWN GLFGGGEGLA GLDGGDWDAD AVAAACSSML  60
LPHAAFQELD ISVPGAATTP PQEGTGVPGA ELNAAGVGED NATPMTAAAT GRRKRRRTRT  120
AKNSEEVESQ RMTHIAVERN RRKQMNEYLA ALRSLMPPSY AQRGDQASIV GGAINFVKEL  180
EQLLQTLETH RQARERAAAV DGGEAQPPPF ANFFTFPQYS MSATSAPAPP PPANNDEGAD  240
GGAEAEASGS KPSAVADVEV TMVESHANLR MLSRRRPRQL LRLLVGLQGH RLTVLHLNMS  300
SAGHMVLYSL SLKVRTPTRC PSRTSKQFRL F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116RKRRR
2112117RKRRRT
3130141RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_21759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053998e-84AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055748e-84AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149658e-84AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126178e-84CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148028.11e-164transcription factor bHLH94-like
SwissprotQ9C7T44e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLM0VBF60.0M0VBF6_HORVV; Uncharacterized protein
STRINGMLOC_21759.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]