PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21553.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 536aa    MW: 59435.8 Da    PI: 6.2249
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21553.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.91.4e-1261655361374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++++++c +av++++ +  + l+++l++++s +g+p+qRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++P++kf+++ 
  MLOC_21553.1 165 LKQVIVACGKAVDENNCH-EDLLISELQKMVSVSGEPIQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDICPFFKFGYMS 259
                   578999******996655.58899********************************************986.567888999**************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s   +   l  +g+rL ++A+++ +pfefn+ v  + ++++le
  MLOC_21553.1 260 ANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAyaRGGGLDIVGRRLCNIAQSCCLPFEFNA-VNAASHEVTLE 355
                   ****************************************************988899999************************.79999****** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L++++gEa+aVn+++qlh+++desv++e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+yy+a+f+++++  pr+++ r++ E+++
  MLOC_21553.1 356 HLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFSRYMETLDYYTAMFEAIDVACPRDDKVRMSTEQHC 452
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++r+ivn++acegaer+erhe ++kWr+r+ +aGF+p+pls  +++++++ll+ ++s  y++ee++g ++lgWk+r+Lv+ SaWr
  MLOC_21553.1 453 VARDIVNLIACEGAERVERHEPFGKWRSRFAMAGFRPYPLSALVNNTIRALLNGYNSY-YKLEEKDGVIYLGWKNRKLVVSSAWR 536
                   ********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.833139517IPR005202Transcription factor GRAS
PfamPF035144.9E-124165536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSTKASNMSY RYPDNSQIPY YSSSMHVGGN GACYVQQNHE DHQYMSSDGG SQNSDSKSQV  60
IHPQYCTLES SSANCVYAAH SSTSPQCISG SHISLHDSHS DHTYDSPASG ITEVPGLGFT  120
NLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN  180
CHEDLLISEL QKMVSVSGEP IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM  240
SYMHLLYDIC PFFKFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARASG  300
PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR  360
KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFSRY  420
METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS  480
RFAMAGFRPY PLSALVNNTI RALLNGYNSY YKLEEKDGVI YLGWKNRKLV VSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-571625361375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_21553.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517040.0AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156010.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLM0VAZ00.0M0VAZ0_HORVV; Uncharacterized protein
STRINGMLOC_21553.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]