PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21277.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 320aa    MW: 36431.6 Da    PI: 5.025
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21277.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++ik
  MLOC_21277.1  12 FLAKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLRNIK 99 
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  MLOC_21277.1 100 RRKP 103
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-398101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-368101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-628101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGLADAGPT PFLAKTYDMV DDPTTDAVVS WSATNNSFVV WDPHLFGTVL LPRYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QRHLLRNIKR RKPTHGSQNQ QSLGSYLEVG  120
NFGHDVEIDQ LKRDKQLLMA EVVKLRQEQQ NTRSDLQAME KRLQGTEQKQ QQMMSFLARV  180
MQNPLFIRQL ISQSEMRKEL EDAISNKRRR RIDQGPEAVD SMGTGSTLEQ GSHVMFEQQE  240
PVDSFVNGVI SDLESSSVDT KGAEVQQSVA SSRSEQLRGR PSGELNDDFW EDLLHEGGLG  300
EEASNLVVPD DMNLLAQEMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-27310117129Heat shock factor protein 1
5d5v_B5e-27310117129Heat shock factor protein 1
5d5v_D5e-27310117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_21277.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581480.0AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187328.10.0heat stress transcription factor A-2e-like
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A287SLI00.0A0A287SLI0_HORVV; Uncharacterized protein
TrEMBLF2D2P10.0F2D2P1_HORVV; Predicted protein
STRINGMLOC_21277.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]