PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20318.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 236aa    MW: 25406.4 Da    PI: 7.0987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20318.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12170215655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  MLOC_20318.2 170 SIAERERRTRISKRLRRLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 215
                   689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-13168219No hitNo description
Gene3DG3DSA:4.10.280.104.6E-15169226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGGARGGGMG GGYAHSHSHS QGGAGGNADA MAAAQQRRLS SQWSFSRQQD MMPHIAEMGM  60
AMPTPTPMPP ADVGESIATG HGSGDLSRSF SMSSWDDTNS NIIFSAPPGG KKAKVMADGD  120
DGMVTSFSNI DSQFGSSLDM PGMDDYLQLQ QDSVACRVRA KRGCATHPRS IAERERRTRI  180
SKRLRRLQDL VPNMDKQTNT SDMLDIAVDY IKVLQDQIEK LKQDQGNCSC SADQKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20318.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690830.0AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.11e-141transcription factor bHLH128-like
TrEMBLM0V8J71e-174M0V8J7_HORVV; Uncharacterized protein
STRINGMLOC_20318.11e-174(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-38bHLH family protein