PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_19822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 169aa MW: 17930.4 Da PI: 9.9535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F++ L H +H MLOC_19822.1 57 FVCKTCGRAFPTFQALGGHRTSH 79 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H MLOC_19822.1 107 HECQICGIGFEMGQALGGHMRRH 129 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.58E-9 | 57 | 129 | No hit | No description |
SMART | SM00355 | 0.2 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-10 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-10 | 107 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.891 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MGAGIKRSRE EESSMSLALS LSTDSASSAG TSAGSGAGAP AKRRRGAVVA TSGDGEFVCK 60 TCGRAFPTFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK RREEKQHECQ ICGIGFEMGQ 120 ALGGHMRRHR EVMAPRSADD RCVALLPDQE VAGHQAAGYQ PPVLLHLFI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 97 | 102 | ERKRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_19822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198432.1 | 3e-97 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A3B6N0M3 | 6e-96 | A0A3B6N0M3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453M9L9 | 6e-96 | A0A453M9L9_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_19822.1 | 1e-118 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-18 | C2H2 family protein |