PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_19788.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 885aa MW: 100893 Da PI: 8.6854

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_19788.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.7	8.4e-23	68	154	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+++A++vGF vr+ ++k ++ + +++++Cs +g+r+e+ + ++++r+r++tr+gC+a++ vk+ + ++++++++ ++HnH ++p MLOC_19788.4 68 FYKSFAHRVGFGVRIGQQKAV--DNVVESKRYMCSSQGFRSEKGIR-NNKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHNHGFVP 154 9*************99988..889************9999.9999*********************************9875 PP
2	FAR1	74.3	2.6e-23	197	287	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF+vr+ ++k +++ + ++f+Cs+eg+r+++ k+ +e+++r+ ++tr+gC+a+++vk + ++++v++l ++HnHel MLOC_19788.4 197 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDRGKDpsNERKKRNVKVTRCGCNAHIVVKWCSGNTYKVSSLIEHHNHELI 287 6**************99887.777799************9988888899999******************************96 PP
3	FAR1	72.1	1.2e-22	335	426	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GFsvr+ + k +++ + +++f+Cs+eg+r+e+ + +++r+ r++tr+gC+a++ vk+ +d+k+++t+ ++HnH ++ MLOC_19788.4 335 EFYKSYAHHCGFSVRIGQRKLL-NKEVVQWKRFMCSREGFRSEKCMDvddPSRKRKVRKVTRCGCDARIIVKRCSDNKYKITSWIEHHNHGFV 426 6**************97776.7788************99888878899999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-19	68	154	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-20	197	287	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.3E-20	335	426	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-24	548	638	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.027	816	865	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	818	860	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-7	840	867	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MESVEIVQAQ PFAAINSALP CDEGRLGTPD RDTTSMPQSS STSTSECVEE SKPAVGMEFE 60 GLEAVEAFYK SFAHRVGFGV RIGQQKAVDN VVESKRYMCS SQGFRSEKGI RNNKKRKREV 120 TRCGCDAHIY VKRCSGNTYK IHSMIEQHNH GFVPPDKLHL IRSNRGASEK EKVIPECDEA 180 LRPSIGMAFE GLSSAEEFYK SYARHCGFKV RVGQHKLLNK EVVQFKRFMC SREGFRSDRG 240 KDPSNERKKR NVKVTRCGCN AHIVVKWCSG NTYKVSSLIE HHNHELISPD KVTKSKRRVS 300 EKTKNKLSSS RVPECGEALK PSLGMVFEDI GSVEEFYKSY AHHCGFSVRI GQRKLLNKEV 360 VQWKRFMCSR EGFRSEKCMD VDDPSRKRKV RKVTRCGCDA RIIVKRCSDN KYKITSWIEH 420 HNHGFVSPDK RHLIRSNRQL GDKAKPTLST HCNASTGTSQ ANRPDHVSKG RSDNVGCTER 480 DLQKYHHDLC SKIKNEDAQM FVARLCRKQQ VDSAFFFDCD VDDRGMLVHV FWADAISREN 540 YIYFSDMLSF DSTNTTNQHG MIFAPFTGTN HHLQSVFFGA AFLADEKIES YAWLFQTFVR 600 AMGGVAPRTI VTREDDRMKS AISNVLPATT HRLCMFEMLG RMPEKVELSL RNNPLFQTRM 660 NECVLGSETV FEFESKWDSV ISDFGLEGNQ WLAERYSTRE RWIPAYFTDI HLSGILRNNA 720 WSKSAKSFFS CFINQKLSLV EFWLRFEAAL DCQRQEESNA DHTSACTTPQ LITPWGLEKH 780 GSLVFTHEVF ERFQEEVVAA RDHCVVEDMA QTEGVKTVAI GDEGSDKVRE VRWDAVTMTA 840 NCSCRLFESV GIPCRHITLV LRSSKLNELP QGCVLKRWQK SAKVG

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MESVEIVQAQ PFAAINSALP CDEGRLGTPD RDTTSMPQSS STSTSECVEE SKPAVGMEFE  60
GLEAVEAFYK SFAHRVGFGV RIGQQKAVDN VVESKRYMCS SQGFRSEKGI RNNKKRKREV  120
TRCGCDAHIY VKRCSGNTYK IHSMIEQHNH GFVPPDKLHL IRSNRGASEK EKVIPECDEA  180
LRPSIGMAFE GLSSAEEFYK SYARHCGFKV RVGQHKLLNK EVVQFKRFMC SREGFRSDRG  240
KDPSNERKKR NVKVTRCGCN AHIVVKWCSG NTYKVSSLIE HHNHELISPD KVTKSKRRVS  300
EKTKNKLSSS RVPECGEALK PSLGMVFEDI GSVEEFYKSY AHHCGFSVRI GQRKLLNKEV  360
VQWKRFMCSR EGFRSEKCMD VDDPSRKRKV RKVTRCGCDA RIIVKRCSDN KYKITSWIEH  420
HNHGFVSPDK RHLIRSNRQL GDKAKPTLST HCNASTGTSQ ANRPDHVSKG RSDNVGCTER  480
DLQKYHHDLC SKIKNEDAQM FVARLCRKQQ VDSAFFFDCD VDDRGMLVHV FWADAISREN  540
YIYFSDMLSF DSTNTTNQHG MIFAPFTGTN HHLQSVFFGA AFLADEKIES YAWLFQTFVR  600
AMGGVAPRTI VTREDDRMKS AISNVLPATT HRLCMFEMLG RMPEKVELSL RNNPLFQTRM  660
NECVLGSETV FEFESKWDSV ISDFGLEGNQ WLAERYSTRE RWIPAYFTDI HLSGILRNNA  720
WSKSAKSFFS CFINQKLSLV EFWLRFEAAL DCQRQEESNA DHTSACTTPQ LITPWGLEKH  780
GSLVFTHEVF ERFQEEVVAA RDHCVVEDMA QTEGVKTVAI GDEGSDKVRE VRWDAVTMTA  840
NCSCRLFESV GIPCRHITLV LRSSKLNELP QGCVLKRWQK SAKVG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_19788.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161160.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A287IQ14	0.0	A0A287IQ14_HORVV; Uncharacterized protein
TrEMBL	A0A287IQ82	0.0	A0A287IQ82_HORVV; Uncharacterized protein
STRING	MLOC_19788.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-98	FAR1-related sequence 5