PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19788.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 561aa    MW: 64490.2 Da    PI: 7.9324
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19788.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1736.4e-2311102190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +fY++YA+++GFsvr+ + k   +++ + +++f+Cs+eg+r+e+  +    +++r+ r++tr+gC+a++ vk+ +d+k+++t+  ++HnH ++
  MLOC_19788.1  11 EFYKSYAHHCGFSVRIGQRKLL-NKEVVQWKRFMCSREGFRSEKCMDvddPSRKRKVRKVTRCGCDARIIVKRCSDNKYKITSWIEHHNHGFV 102
                   6****************97776.7788****************99888878899999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2011102IPR004330FAR1 DNA binding domain
PfamPF105512.4E-24224314IPR018289MULE transposase domain
PROSITE profilePS5096610.027492541IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-6494537IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-7516543IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVFEDIGSVE EFYKSYAHHC GFSVRIGQRK LLNKEVVQWK RFMCSREGFR SEKCMDVDDP  60
SRKRKVRKVT RCGCDARIIV KRCSDNKYKI TSWIEHHNHG FVSPDKRHLI RSNRQLGDKA  120
KPTLSTHCNA STGTSQANRP DHVSKGRSDN VGCTERDLQK YHHDLCSKIK NEDAQMFVAR  180
LCRKQQVDSA FFFDCDVDDR GMLVHVFWAD AISRENYIYF SDMLSFDSTN TTNQHGMIFA  240
PFTGTNHHLQ SVFFGAAFLA DEKIESYAWL FQTFVRAMGG VAPRTIVTRE DDRMKSAISN  300
VLPATTHRLC MFEMLGRMPE KVELSLRNNP LFQTRMNECV LGSETVFEFE SKWDSVISDF  360
GLEGNQWLAE RYSTRERWIP AYFTDIHLSG ILRNNAWSKS AKSFFSCFIN QKLSLVEFWL  420
RFEAALDCQR QEESNADHTS ACTTPQLITP WGLEKHGSLV FTHEVFERFQ EEVVAARDHC  480
VVEDMAQTEG VKTVAIGDEG SDKVREVRWD AVTMTANCSC RLFESVGIPC RHITLVLRSS  540
KLNELPQGCV LKRWQKSAKV G
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161160.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A287IQ140.0A0A287IQ14_HORVV; Uncharacterized protein
TrEMBLA0A287IQ720.0A0A287IQ72_HORVV; Uncharacterized protein
STRINGMLOC_19788.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5