PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_19593.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 475aa MW: 50959 Da PI: 6.4966

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_19593.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	103	163	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss MLOC_19593.3 103 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 163 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	100	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	105	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MELAGAARPQ PPEPDVAPPR TPPQAPAEEN SCKDTGDTRI TEEKSCTPHD LNLSQPNNSG 60 LNSLSACENQ TSNGDEMTEP ESRLEAAKTE GDGSSKEKVL KKPDKILPCP RCNSMDTKFC 120 YYNNYNIHQP RHFCRGCQRY WTAGGSMRNL PVGAGRRKSK SSSTNCHGIF IPGSSLAPPG 180 IPLPIKENQP AVKFGSDSTL SNSMASLLRV EEQNKNSNLA STAHPRNGEN QTCPPSATTS 240 DNPRTESVKV TAGVQQNGIA GDCNGVTPMP PIPCFPGPPF VYPWNPAWNG VPAMAAQVCP 300 VPAEPANCSE NGNGGTIQWN FPPMVPMPGF CGPPIPFPLM PPSVWPLVSP WPNGAWSAPW 360 LGPSYNMSAA PPTSTSTCSD SGSPVLGKHP RDSDPQGGEK AEKSLWIPKT LRIDDPDEAA 420 KSSIWTTLGI EPGERGMFRP FQQKSGGREQ MSNAARVMQA NPAAQSRFES FQETT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MELAGAARPQ PPEPDVAPPR TPPQAPAEEN SCKDTGDTRI TEEKSCTPHD LNLSQPNNSG  60
LNSLSACENQ TSNGDEMTEP ESRLEAAKTE GDGSSKEKVL KKPDKILPCP RCNSMDTKFC  120
YYNNYNIHQP RHFCRGCQRY WTAGGSMRNL PVGAGRRKSK SSSTNCHGIF IPGSSLAPPG  180
IPLPIKENQP AVKFGSDSTL SNSMASLLRV EEQNKNSNLA STAHPRNGEN QTCPPSATTS  240
DNPRTESVKV TAGVQQNGIA GDCNGVTPMP PIPCFPGPPF VYPWNPAWNG VPAMAAQVCP  300
VPAEPANCSE NGNGGTIQWN FPPMVPMPGF CGPPIPFPLM PPSVWPLVSP WPNGAWSAPW  360
LGPSYNMSAA PPTSTSTCSD SGSPVLGKHP RDSDPQGGEK AEKSLWIPKT LRIDDPDEAA  420
KSSIWTTLGI EPGERGMFRP FQQKSGGREQ MSNAARVMQA NPAAQSRFES FQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_19593.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181996.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A287H7D7	0.0	A0A287H7D7_HORVV; Uncharacterized protein
STRING	MLOC_19593.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-41	cycling DOF factor 2